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archive/ 06-Feb-2010 08:14 -
gene_naming_guidelines.txt 06-Sep-2004 10:49 14K
THESE FILES CONTAIN *ONLY* NAMED GENES! If a hypothetical ORF has not
been assigned either a reserved or standard gene name, it will not be
in these files. If you want all S. cerevisiae genes (ORFs and named
genes) please see the following file:
ftp://genome-ftp.stanford.edu/yeast/data_download/literature_curation/orf_geneontology.tab
Also note that these files do not distinguish between reserved and
standard gene names. If you want a file that lists all S. cerevisiae
genes (ORFs and named genes) and indicates whether the gene name is
"standard" (i.e. published) or "reserved" please see the following file:
ftp://genome-ftp.stanford.edu/yeast/data_download/chromosomal_feature/"chromosomal_feature/chromosomal_feature.tab
This directory includes a text file containing the gene naming
guidelines established by the yeast community and files containing
yeast gene names and any data that may have been submitted by yeast
researchers upon registering gene names at SGD.
FILES:
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gene_naming_guidelines.txt
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This file contains the text version of the yeast gene naming
guidelines decided upon by the yeast research community.
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registry.genenames.tab
----------------------
This tab delimited file includes data submitted that may have been
submitted by yeast researchers when registering a gene name.
Column 1 = Locus name
Column 2 = Other name
Column 3 = Description
Column 4 = Gene product
Column 5 = Phenotype
Column 6 = ORF name
Column 7 = SGDID
Multiple values are separated by a pipe symbol ('|'), this is used in
column 2, 4 and 5.
(Note: Every entry should contains "Locus name", "Other name", "ORF
Name" and "SGDID". Each entry may or may not contain the categories
"Description", "Gene product" and "Phenotype".)
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registry.genenames.txt
----------------------
This file contains a text version of the same information found in
"registry.genenames.tab". All lines have been wrapped to a maximum of
80 characters.